PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009763292.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 234aa    MW: 26851.3 Da    PI: 4.7524
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009763292.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.73.6e-141050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    ri ++s r+  ++kR + ++KKAeE S+ Cd+eva+iifs+
  XP_009763292.1 10 RICSESVRNFILIKRATSLFKKAEEFSIFCDVEVAIIIFSE 50
                    67888999999****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-9160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.572150IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-17394IPR002100Transcription factor, MADS-box
PfamPF003195.8E-131050IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MARKKLRHTR ICSESVRNFI LIKRATSLFK KAEEFSIFCD VEVAIIIFSE GEIQPIAYPS  60
IGHAKEILMR YLSFSEAERH KRLDKHETYL LEKVNEQEEK ISKVEKMNEG KEMDILFNQL  120
VEEKNINELD ARQLKGLLKL SSAKMAKLNE RKKQVIQPSE SPYRPSDFKL NNNNNPDVAP  180
ATSLMDDLIN DPWFVENMAA NQNEFGTDEF CTEPAPEEGN DNNAGDDGNP EDLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763292.11e-173PREDICTED: MADS-box protein AGL24-like
TrEMBLM1DAJ04e-77M1DAJ0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000859051e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.15e-14AGAMOUS-like 96